PRJNA605328

BioProject first seen 2021

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

95/100 · A

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means

claude:haiku

This fruit fly RNA-Seq from NextSeq 500 totals 28.3 billion bases with high quality (96.1% Q30). The dataset enables comprehensive transcriptome profiling in this model organism.

Data type / assay

bulk-RNA-seq

Organism

Drosophila melanogaster

Instrument

NextSeq 500

Platform

ILLUMINA

Read type

short-read

Files available

FASTQ (raw reads)

N numbers (samples, groups)

18 runs

Metrics (value · how obtained)

checksum ok yes reported

total bases 28318440696 reported

total reads 337124294 reported

n content pct 0.001 measured

pct q20 bases 97.6 measured

pct q30 bases 96.1 measured

gc content pct 47.8 measured

mean read length 84 measured

mean base quality 34.9 measured

adapter content pct 0.05 measured

duplication rate pct 43.69 measured

How this grade was computed

Weighted mean of 4 scored metric(s) → 95/100

The A grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 96.1 measured ×1 100%

mean base quality 34.9 measured ×0.6 100%

adapter content pct 0.05 measured ×0.4 100%

duplication rate pct 43.69 measured ×0.4 70%

QC cost 35 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0