PRJNA607543

BioProject first seen 2020

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

100/100 · A

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means

claude:haiku

This yeast amplicon dataset from NextSeq 550 totals 15.2 billion bases with high quality (92% Q30). The dataset supports targeted amplicon studies in Saccharomyces cerevisiae, a widely-used model organism.

Data type / assay

amplicon

Organism

Saccharomyces cerevisiae

Instrument

NextSeq 550

Platform

ILLUMINA

Read type

short-read

Files available

FASTQ (raw reads)

N numbers (samples, groups)

13 runs

Metrics (value · how obtained)

checksum ok yes reported

total bases 15248133000 reported

total reads 50827110 reported

n content pct 0.017 measured

pct q20 bases 97.4 measured

pct q30 bases 92 measured

gc content pct 50.7 measured

mean read length 150 measured

mean base quality 34.3 measured

adapter content pct 0 measured

duplication rate pct 0.43 measured

mean target coverage 63533.9 extrapolated

How this grade was computed

Weighted mean of 2 scored metric(s) → 100/100

The A grade is a transparent weighted average. Each metric below scored from 0–100% against the published amplicon thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 92 measured ×1 100%

adapter content pct 0 measured ×0.5 100%

QC cost 26 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0