PRJNA608953

BioProject

Provenance — who produced it, who reused it

Linked to 0 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

No linked papers found in the corpus yet.

Deep data QC

47/100 · F

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

Data type / assay

WGS

Organism

Phytophthora betacei

Instrument

Illumina HiSeq 2000

Platform

ILLUMINA

Read type

hybrid (short+long)

Files available

FASTQ (raw reads), BAM/CRAM (aligned)

N numbers (samples, groups)

9 runs

Metrics (value · how obtained)

checksum ok yes reported

total bases 34006743241 reported

total reads 90716668 reported

n content pct 0 measured

pct q20 bases 0 measured

pct q30 bases 0 measured

gc content pct 50.7 measured

mean read length 11319.7 measured

mean base quality 0 measured

adapter content pct 0.01 measured

duplication rate pct 0 measured

How this grade was computed

Weighted mean of 3 scored metric(s) → 47/100

The F grade is a transparent weighted average. Each metric below scored from 0–100% against the published WGS thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 0 measured ×1 0%

duplication rate pct 0 measured ×0.5 100%

adapter content pct 0.01 measured ×0.4 100%

QC cost 19 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0