PRJNA609596

BioProject first seen 2021

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

77/100 · C

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means

claude:haiku

Illumina NovaSeq 6000 short-read WGS of rat gut microbiota with massive 1.6B reads and excellent quality (97.9% Q20, 93.8% Q30), enabling metagenomic assembly and functional characterization of rodent microbiota. Exceptional depth supports recovery of low-abundance community members and antibiotic-resistance genes.

Data type / assay

WGS

Organism

rat gut metagenome

Instrument

Illumina NovaSeq 6000

Platform

ILLUMINA

Read type

short-read

Files available

FASTQ (raw reads)

N numbers (samples, groups)

74 runs

Metrics (value · how obtained)

checksum ok yes reported

total bases 471268888114 reported

total reads 1560493007 reported

n content pct 0 measured

pct q20 bases 97.9 measured

pct q30 bases 93.8 measured

gc content pct 43.5 measured

mean read length 151 measured

mean base quality 36 measured

adapter content pct 9.58 measured

duplication rate pct 19.86 measured

How this grade was computed

Weighted mean of 3 scored metric(s) → 77/100

The C grade is a transparent weighted average. Each metric below scored from 0–100% against the published WGS thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 93.8 measured ×1 100%

duplication rate pct 19.86 measured ×0.5 63%

adapter content pct 9.58 measured ×0.4 39%

QC cost 37 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0