Corpus 1,272 assessed · 1,173 scored · 643 reproduced ≥75 · 168 flagged ·∅ 74.1/100
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PRJNA632538

BioProject first seen 2021

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

33/100 · F

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

This bacterial RNA-Seq from Oxford Nanopore MinION provides long-read data totaling 2.37 billion bases but with very low quality (0.7% Q20). Despite poor quality characteristic of nanopore reads, the data enables full-length transcript characterization.

Data type / assay
bulk-RNA-seq
Organism
Escherichia coli
Instrument
MinION
Platform
OXFORD_NANOPORE
Read type
long-read
Files available
FASTQ (raw reads)
N numbers (samples, groups)
8 runs
Metrics (value · how obtained)
checksum ok yes reported
total bases 2368683012 reported
total reads 3940181 reported
n content pct 0 measured
pct q20 bases 0.7 measured
pct q30 bases 0 measured
gc content pct 53.3 measured
mean read length 519.8 measured
mean base quality 8.9 measured
adapter content pct 0 measured
duplication rate pct 0.05 measured
How this grade was computed
Weighted mean of 4 scored metric(s) → 33/100

The F grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 0 measured ×1 0%
mean base quality 8.9 measured ×0.6 0%
adapter content pct 0 measured ×0.4 100%
duplication rate pct 0.05 measured ×0.4 100%
QC cost 29 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0