Corpus 1,278 assessed · 1,179 scored · 644 reproduced ≥75 · 170 flagged ·∅ 74/100
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PRJNA633106

BioProject first seen 2020

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

100/100 · A

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

16S amplicon survey of Mycobacterium intracellulare via Illumina MiSeq, generating 25 million reads and 7.2 billion bases with excellent quality (98% Q20, 97.1% Q30) and the high 61.3% GC characteristic of mycobacterial genomes. Enables precise Mycobacterium species and strain differentiation, population diversity analysis, and phylogenetic reconstruction; the minimal N-content and exceptional base fidelity support confident allele calling at intermediate frequencies. This dataset is particularly valuable for mycobacterial epidemiology and antimicrobial resistance profiling studies.

Data type / assay
amplicon
Organism
Mycobacterium intracellulare
Instrument
Illumina MiSeq
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads)
N numbers (samples, groups)
80 runs
Metrics (value · how obtained)
checksum ok yes reported
total bases 7181578236 reported
total reads 25039001 reported
n content pct 0.042 measured
pct q20 bases 98 measured
pct q30 bases 97.1 measured
gc content pct 61.3 measured
mean read length 144.6 measured
mean base quality 37 measured
adapter content pct 0 measured
duplication rate pct 82.3 measured
How this grade was computed
Weighted mean of 2 scored metric(s) → 100/100

The A grade is a transparent weighted average. Each metric below scored from 0–100% against the published amplicon thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 97.1 measured ×1 100%
adapter content pct 0 measured ×0.5 100%
QC cost 5 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0