Corpus 1,278 assessed · 1,179 scored · 644 reproduced ≥75 · 170 flagged ·∅ 74/100
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PRJNA633380

BioProject first seen 2020

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

100/100 · A

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

16S amplicon survey of Mycobacteriaceae bacterium via Illumina MiSeq, producing 12 million reads (3.5 billion bases) with high quality (97.7% Q20, 96.8% Q30) and the elevated 58.2% GC typical of this family. Enables species-level identification and strain-level discrimination within Mycobacteriaceae; the low N-content (0.025%) and excellent base fidelity support precise phylogenetic placement and allele frequency inference. This dataset is well-suited for taxonomic surveys and molecular epidemiology of mycobacterial infections.

Data type / assay
amplicon
Organism
Mycobacteriaceae bacterium
Instrument
Illumina MiSeq
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads)
N numbers (samples, groups)
370 runs
Metrics (value · how obtained)
checksum ok yes reported
total bases 3484026020 reported
total reads 12013849 reported
n content pct 0.025 measured
pct q20 bases 97.7 measured
pct q30 bases 96.8 measured
gc content pct 58.2 measured
mean read length 145.2 measured
mean base quality 37 measured
adapter content pct 0 measured
duplication rate pct 79.84 measured
How this grade was computed
Weighted mean of 2 scored metric(s) → 100/100

The A grade is a transparent weighted average. Each metric below scored from 0–100% against the published amplicon thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 96.8 measured ×1 100%
adapter content pct 0 measured ×0.5 100%
QC cost 2 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0