PRJNA633444

BioProject first seen 2020

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

93/100 · A

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means

claude:haiku

This TB pathogen amplicon dataset from MiniSeq totals 13.2 billion bases with high quality (87.9% Q30) and very high GC content (61.4%). The dataset enables large-scale TB genotyping and drug-resistance profiling.

Data type / assay

amplicon

Organism

Mycobacterium tuberculosis

Instrument

Illumina MiniSeq

Platform

ILLUMINA

Read type

short-read

Files available

FASTQ (raw reads)

N numbers (samples, groups)

109 runs

Metrics (value · how obtained)

checksum ok yes reported

total bases 13195923614 reported

total reads 45439675 reported

n content pct 0.035 measured

pct q20 bases 89.9 measured

pct q30 bases 87.9 measured

gc content pct 61.4 measured

mean read length 146.1 measured

mean base quality 34.2 measured

adapter content pct 0 measured

duplication rate pct 79.96 measured

How this grade was computed

Weighted mean of 2 scored metric(s) → 93/100

The A grade is a transparent weighted average. Each metric below scored from 0–100% against the published amplicon thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 87.9 measured ×1 90%

adapter content pct 0 measured ×0.5 100%

QC cost 18 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0