PRJNA633670

BioProject first seen 2020

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

33/100 · F

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means

claude:haiku

This mouse gut amplicon dataset from MiSeq totals 3.6 billion bases with notably lower base quality (49.4% Q30). The dataset supports rodent microbiota studies despite moderate Q30 performance.

Data type / assay

amplicon

Organism

mouse gut metagenome

Instrument

Illumina MiSeq

Platform

ILLUMINA

Read type

short-read

Files available

FASTQ (raw reads)

N numbers (samples, groups)

114 runs

Metrics (value · how obtained)

checksum ok yes reported

total bases 3624280174 reported

total reads 9040359 reported

n content pct 0 measured

pct q20 bases 90.1 measured

pct q30 bases 49.4 measured

gc content pct 52.3 measured

mean read length 251.6 measured

mean base quality 27.7 measured

adapter content pct 0 measured

duplication rate pct 94.38 measured

How this grade was computed

Weighted mean of 2 scored metric(s) → 33/100

The F grade is a transparent weighted average. Each metric below scored from 0–100% against the published amplicon thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 49.4 measured ×1 0%

adapter content pct 0 measured ×0.5 100%

QC cost 5 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0