PRJNA634679

BioProject first seen 2020

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

84/100 · B

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means

claude:haiku

Illumina HiSeq 2500 targeted exome capture (WES) of mouse with 1.2B reads and robust quality (96.2% Q20, 92.8% Q30), providing deep coverage for variant discovery across protein-coding sequences. High read depth supports copy-number and structural variant detection in captured regions.

Data type / assay

WES

Organism

Mus musculus

Instrument

Illumina HiSeq 2500

Platform

ILLUMINA

Read type

short-read

Files available

FASTQ (raw reads)

N numbers (samples, groups)

205 runs

Metrics (value · how obtained)

checksum ok yes reported

total bases 257134269601 reported

total reads 1207657019 reported

n content pct 0.002 measured

pct q20 bases 96.2 measured

pct q30 bases 92.8 measured

gc content pct 46.9 measured

mean read length 126 measured

mean base quality 38.5 measured

adapter content pct 0 measured

duplication rate pct 90.71 measured

mean target coverage 4761.7 extrapolated

How this grade was computed

Weighted mean of 4 scored metric(s) → 84/100

The B grade is a transparent weighted average. Each metric below scored from 0–100% against the published WES thresholds, weighted by its importance; nothing is hidden or subjective.

mean target coverage 4761.7 extrapolated ×1.2 100%

pct q30 bases 92.8 measured ×1 100%

duplication rate pct 90.71 measured ×0.5 0%

adapter content pct 0 measured ×0.4 100%

QC cost 19 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0