PRJNA635674

BioProject first seen 2021

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

100/100 · A

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means

claude:haiku

Illumina MiSeq amplicon of mouse gut community with good base quality (96.6% Q20) but shallow read depth (~2M), appropriate for presence/absence surveys or rapid screening of many samples. Limited per-sample coverage restricts quantitative abundance estimates.

Data type / assay

amplicon

Organism

mouse gut metagenome

Instrument

Illumina MiSeq

Platform

ILLUMINA

Read type

short-read

Files available

FASTQ (raw reads)

N numbers (samples, groups)

36 runs

Metrics (value · how obtained)

checksum ok yes reported

total bases 1170264522 reported

total reads 1943961 reported

n content pct 0.001 measured

pct q20 bases 96.6 measured

pct q30 bases 91.6 measured

gc content pct 53.6 measured

mean read length 321 measured

mean base quality 36 measured

adapter content pct 0.02 measured

duplication rate pct 87.98 measured

How this grade was computed

Weighted mean of 2 scored metric(s) → 100/100

The A grade is a transparent weighted average. Each metric below scored from 0–100% against the published amplicon thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 91.6 measured ×1 100%

adapter content pct 0.02 measured ×0.5 100%

QC cost 5 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0