Corpus 1,278 assessed · 1,179 scored · 644 reproduced ≥75 · 170 flagged ·∅ 74/100
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PRJNA637826

BioProject first seen 2020

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

100/100 · A

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

16S amplicon survey of fecal microbiota via Illumina MiSeq, producing 778,000 reads and 468 million bases with high quality (97.4% Q20, 92% Q30) and no N content. Characterizes intestinal bacterial communities with strong sequence fidelity; the 53.3% GC reflects typical fecal microbiota composition. Moderate read count provides adequate depth for compositional and diversity profiling; the excellent Q30 supports reliable taxonomy assignment without aggressive trimming.

Data type / assay
amplicon
Organism
feces metagenome
Instrument
Illumina MiSeq
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads)
N numbers (samples, groups)
15 runs
Metrics (value · how obtained)
checksum ok yes reported
total bases 468609442 reported
total reads 778421 reported
n content pct 0 measured
pct q20 bases 97.4 measured
pct q30 bases 92 measured
gc content pct 53.3 measured
mean read length 301 measured
mean base quality 35.9 measured
adapter content pct 0 measured
duplication rate pct 97.92 measured
How this grade was computed
Weighted mean of 2 scored metric(s) → 100/100

The A grade is a transparent weighted average. Each metric below scored from 0–100% against the published amplicon thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 92 measured ×1 100%
adapter content pct 0 measured ×0.5 100%
QC cost 2 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0