PRJNA640363

BioProject first seen 2020

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

89/100 · B

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means

claude:haiku

This sugar beet RNA-Seq from HiSeq 2500 totals 91.5 billion bases with moderate quality (87.4% Q30). The dataset supports investigation of gene expression patterns relevant to crop plant biology and agricultural research.

Data type / assay

bulk-RNA-seq

Organism

Beta vulgaris

Instrument

Illumina HiSeq 2500

Platform

ILLUMINA

Read type

short-read

Files available

FASTQ (raw reads)

N numbers (samples, groups)

17 runs

Metrics (value · how obtained)

checksum ok yes reported

total bases 91548946944 reported

total reads 363289472 reported

n content pct 0.004 measured

pct q20 bases 93.6 measured

pct q30 bases 87.4 measured

gc content pct 42.7 measured

mean read length 126 measured

mean base quality 35 measured

adapter content pct 8.07 measured

duplication rate pct 24.15 measured

How this grade was computed

Weighted mean of 4 scored metric(s) → 89/100

The B grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 87.4 measured ×1 87%

mean base quality 35 measured ×0.6 100%

adapter content pct 8.07 measured ×0.4 66%

duplication rate pct 24.15 measured ×0.4 100%

QC cost 29 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0