PRJNA643157

BioProject first seen 2020

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

68/100 · D

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means

claude:haiku

This large TB pathogen amplicon dataset from NextSeq 500 totals 67.2 billion bases with moderate quality (80.4% Q30) and very high GC content (59.5%). The substantial depth supports comprehensive TB genotyping and drug-resistance assessment.

Data type / assay

amplicon

Organism

Mycobacterium tuberculosis

Instrument

NextSeq 500

Platform

ILLUMINA

Read type

short-read

Files available

FASTQ (raw reads)

N numbers (samples, groups)

747 runs

Metrics (value · how obtained)

checksum ok yes reported

total bases 67190687465 reported

total reads 241933035 reported

n content pct 0.032 measured

pct q20 bases 85.7 measured

pct q30 bases 80.4 measured

gc content pct 59.5 measured

mean read length 129.6 measured

mean base quality 31.7 measured

adapter content pct 0 measured

duplication rate pct 57.66 measured

How this grade was computed

Weighted mean of 2 scored metric(s) → 68/100

The D grade is a transparent weighted average. Each metric below scored from 0–100% against the published amplicon thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 80.4 measured ×1 52%

adapter content pct 0 measured ×0.5 100%

QC cost 14 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0