PRJNA643242

BioProject first seen 2020

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

100/100 · A

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means

claude:haiku

This TB pathogen amplicon dataset from NextSeq 500 totals 56.5 billion bases with very high quality (96.9% Q30) and elevated GC content (61.3%). The exceptional quality enables sensitive and reliable tuberculosis strain characterization.

Data type / assay

amplicon

Organism

Mycobacterium tuberculosis

Instrument

NextSeq 500

Platform

ILLUMINA

Read type

short-read

Files available

FASTQ (raw reads)

N numbers (samples, groups)

747 runs

Metrics (value · how obtained)

checksum ok yes reported

total bases 56537614413 reported

total reads 203044682 reported

n content pct 0.154 measured

pct q20 bases 97.8 measured

pct q30 bases 96.9 measured

gc content pct 61.3 measured

mean read length 130.4 measured

mean base quality 37.1 measured

adapter content pct 0 measured

duplication rate pct 68.36 measured

How this grade was computed

Weighted mean of 2 scored metric(s) → 100/100

The A grade is a transparent weighted average. Each metric below scored from 0–100% against the published amplicon thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 96.9 measured ×1 100%

adapter content pct 0 measured ×0.5 100%

QC cost 7 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0