PRJNA643361

BioProject first seen 2021

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

97/100 · A

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means

claude:haiku

This porcine amplicon metagenomics dataset from MiSeq totals 817.7 million bases with high quality (89.1% Q30). The dataset enables investigation of swine-associated microbial communities.

Data type / assay

amplicon

Organism

pig metagenome

Instrument

Illumina MiSeq

Platform

ILLUMINA

Read type

short-read

Files available

FASTQ (raw reads)

N numbers (samples, groups)

20 runs

Metrics (value · how obtained)

checksum ok yes reported

total bases 817652932 reported

total reads 1629918 reported

n content pct 0 measured

pct q20 bases 93.2 measured

pct q30 bases 89.1 measured

gc content pct 53.4 measured

mean read length 250.8 measured

mean base quality 35.1 measured

adapter content pct 0 measured

duplication rate pct 91.52 measured

How this grade was computed

Weighted mean of 2 scored metric(s) → 97/100

The A grade is a transparent weighted average. Each metric below scored from 0–100% against the published amplicon thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 89.1 measured ×1 96%

adapter content pct 0 measured ×0.5 100%

QC cost 6 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0