Corpus 1,278 assessed · 1,179 scored · 644 reproduced ≥75 · 170 flagged ·∅ 74/100
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PRJNA645244

BioProject first seen 2022

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

100/100 · A

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

Marine amplicon dataset from an Illumina MiSeq with 9.2 million short reads at 92% Q30, targeting community composition and marker gene diversity. The read depth is appropriate for taxonomic profiling of oceanic microbial populations.

Data type / assay
amplicon
Organism
marine metagenome
Instrument
Illumina MiSeq
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads)
N numbers (samples, groups)
183 runs
Metrics (value · how obtained)
checksum ok yes reported
total bases 4619766924 reported
total reads 9235692 reported
n content pct 0 measured
pct q20 bases 94.9 measured
pct q30 bases 92.4 measured
gc content pct 47.9 measured
mean read length 250 measured
mean base quality 36.1 measured
adapter content pct 0.22 measured
duplication rate pct 93.11 measured
How this grade was computed
Weighted mean of 2 scored metric(s) → 100/100

The A grade is a transparent weighted average. Each metric below scored from 0–100% against the published amplicon thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 92.4 measured ×1 100%
adapter content pct 0.22 measured ×0.5 100%
QC cost 15 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0