Corpus 1,272 assessed · 1,173 scored · 643 reproduced ≥75 · 168 flagged ·∅ 74.1/100
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PRJNA647166

BioProject

Provenance — who produced it, who reused it

Linked to 0 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

No linked papers found in the corpus yet.

Deep data QC

33/100 · F

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

Long-read cDNA sequencing of tall fescue (*Lolium arundinaceum*) via PacBio RS II capturing full-length transcripts, enabling complete isoform phasing and gene structure determination. Ideal for alternative splicing profiling and detecting structural variants in plant genomes, though lower throughput limits genome-wide replication.

Data type / assay
bulk-RNA-seq
Organism
Lolium arundinaceum
Instrument
PacBio RS II
Platform
PACBIO_SMRT
Read type
long-read
Files available
FASTQ (raw reads)
N numbers (samples, groups)
1 runs
Metrics (value · how obtained)
checksum ok yes reported
total bases 16202559191 reported
total reads 11961341 reported
n content pct 0 measured
pct q20 bases 0 measured
pct q30 bases 0 measured
gc content pct 48.1 measured
mean read length 1113.9 measured
mean base quality 0 measured
adapter content pct 0 measured
duplication rate pct 16.97 measured
How this grade was computed
Weighted mean of 4 scored metric(s) → 33/100

The F grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 0 measured ×1 0%
mean base quality 0 measured ×0.6 0%
adapter content pct 0 measured ×0.4 100%
duplication rate pct 16.97 measured ×0.4 100%
QC cost 30 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0