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Provenance — who produced it, who reused it
Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.
Reused by
1 further paper cites this accession but reuse could not be confirmed.
Deep data QC
55/100 · FStandardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured
Data type / assay
WGS
Organism
Phocaeicola vulgatus CL09T03C04
Instrument
Illumina HiSeq 2000
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads)
N numbers (samples, groups)
3 runs
Metrics (value · how obtained)
checksum ok
yes
reported
total bases
2250041842
reported
total reads
11142104
reported
n content pct
0.017
measured
pct q20 bases
82.7
measured
pct q30 bases
72.9
measured
gc content pct
42.1
measured
mean read length
101
measured
mean base quality
29.8
measured
adapter content pct
0.61
measured
duplication rate pct
0.05
measured
How this grade was computed
Weighted mean of 3 scored metric(s) → 55/100
The F grade is a transparent weighted average. Each metric below scored from 0–100% against the published WGS thresholds, weighted by its importance; nothing is hidden or subjective.
pct q30 bases
72.9
measured
×1
14%
duplication rate pct
0.05
measured
×0.5
100%
adapter content pct
0.61
measured
×0.4
100%
QC cost
1 s compute
measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0