PRJNA650131

BioProject first seen 2021

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

85/100 · B

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means

claude:haiku

HiSeq X Ten hybrid WGS (short+long reads) of Escherichia coli at exceptional ultra-deep coverage (>3600×) with excellent quality (98.7% Q20) enabling complete genome assembly, structural variant discovery, and variant validation in bacterial genomics.

Data type / assay

WGS

Organism

Escherichia coli

Instrument

HiSeq X Ten

Platform

ILLUMINA

Read type

hybrid (short+long)

Files available

FASTQ (raw reads)

N numbers (samples, groups)

12 runs

Metrics (value · how obtained)

checksum ok yes reported

total bases 16985248116 reported

total reads 36394429 reported

mean coverage 3692.4 extrapolated

n content pct 0.005 measured

pct q20 bases 98.7 measured

pct q30 bases 96.2 measured

gc content pct 52.5 measured

mean read length 151 measured

mean base quality 39.5 measured

adapter content pct 2.33 measured

duplication rate pct 36.1 measured

How this grade was computed

Weighted mean of 4 scored metric(s) → 85/100

The B grade is a transparent weighted average. Each metric below scored from 0–100% against the published WGS thresholds, weighted by its importance; nothing is hidden or subjective.

mean coverage 3692.4 extrapolated ×1.2 100%

pct q30 bases 96.2 measured ×1 100%

duplication rate pct 36.1 measured ×0.5 12%

adapter content pct 2.33 measured ×0.4 91%

QC cost 47 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0