PRJNA65085

BioProject first seen 2012

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

47/100 · F

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means

claude:haiku

Illumina Genome Analyzer II WGS of Streptomyces filamentosus NRRL 11379 with poor per-base quality (30.7% Q20) but expected high GC content (63.2%) characteristic of the genus; reuse limited to assembly scaffolding or comparative contexts rather than variant calling.

Data type / assay

WGS

Organism

Streptomyces filamentosus NRRL 11379

Instrument

Illumina Genome Analyzer II

Platform

ILLUMINA

Read type

short-read

Files available

FASTQ (raw reads)

N numbers (samples, groups)

4 runs

Metrics (value · how obtained)

checksum ok yes reported

total bases 23496338010 reported

total reads 116318505 reported

n content pct 10.033 measured

pct q20 bases 30.7 measured

pct q30 bases 14.8 measured

gc content pct 63.2 measured

mean read length 101 measured

mean base quality 10.7 measured

adapter content pct 1.3 measured

duplication rate pct 1.8 measured

How this grade was computed

Weighted mean of 3 scored metric(s) → 47/100

The F grade is a transparent weighted average. Each metric below scored from 0–100% against the published WGS thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 14.8 measured ×1 0%

duplication rate pct 1.8 measured ×0.5 100%

adapter content pct 1.3 measured ×0.4 98%

QC cost 28 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0