PRJNA656260

BioProject

Provenance — who produced it, who reused it

Linked to 0 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

No linked papers found in the corpus yet.

Deep data QC

29/100 · F

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means

claude:haiku

Oxford Nanopore long-read sequencing of human whole exome via MinION generating 23k reads with mean length ~2.7 kb and modest quality (51.3% Q20), enabling full exon-spanning isoform detection. Complements short-read WES for phasing variants and detecting structural variants within coding regions despite low throughput.

Data type / assay

WES

Organism

Homo sapiens

Instrument

MinION

Platform

OXFORD_NANOPORE

Read type

long-read

Files available

FASTQ (raw reads)

N numbers (samples, groups)

1 runs

Metrics (value · how obtained)

checksum ok yes reported

total bases 62676680 reported

total reads 23305 reported

n content pct 0 measured

pct q20 bases 51.3 measured

pct q30 bases 21 measured

gc content pct 41.1 measured

mean read length 2692.2 measured

mean base quality 19.9 measured

adapter content pct 0 measured

duplication rate pct 0.02 measured

mean target coverage 1 extrapolated

How this grade was computed

Weighted mean of 4 scored metric(s) → 29/100

The F grade is a transparent weighted average. Each metric below scored from 0–100% against the published WES thresholds, weighted by its importance; nothing is hidden or subjective.

mean target coverage 1 extrapolated ×1.2 0%

pct q30 bases 21 measured ×1 0%

duplication rate pct 0.02 measured ×0.5 100%

adapter content pct 0 measured ×0.4 100%

QC cost 15 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0