PRJNA657051
BioProjectProvenance — who produced it, who reused it
Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.
1 further paper cites this accession but reuse could not be confirmed.
Deep data QC
47/100 · FStandardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured
Large mouse bulk-RNA-seq collection with 150 bp reads (2.15 billion total) at 82.4% Q20 and 67.4% Q30 demonstrates consistent HiSeq 4000 quality metrics across replicates. The 36.6% GC aligns with murine transcriptomes; despite moderate Q30 rates, the massive depth supports sensitive detection of tissue-specific isoforms and low-abundance transcripts across multiple biological conditions.
The F grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.
measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0
Scientific quality
Based on hands-on reproduction of the papers that use this dataset. A reproducible paper that stands on this data is positive evidence; a flagged one is a prompt to look closer — never a verdict on the dataset itself without the evidence.