PRJNA662422

BioProject first seen 2020

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

100/100 · A

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means

claude:haiku

This fat douse amplicon dataset from HiSeq 2500 totals 12.4 billion bases with high quality (96.2% Q30). The dataset supports targeted amplicon studies in this less-common rodent model.

Data type / assay

amplicon

Organism

Meriones unguiculatus

Instrument

Illumina HiSeq 2500

Platform

ILLUMINA

Read type

short-read

Files available

FASTQ (raw reads)

N numbers (samples, groups)

154 runs

Metrics (value · how obtained)

checksum ok yes reported

total bases 12379169000 reported

total reads 24758338 reported

n content pct 0 measured

pct q20 bases 98 measured

pct q30 bases 96.2 measured

gc content pct 54.5 measured

mean read length 250 measured

mean base quality 38.3 measured

adapter content pct 0 measured

duplication rate pct 79.73 measured

How this grade was computed

Weighted mean of 2 scored metric(s) → 100/100

The A grade is a transparent weighted average. Each metric below scored from 0–100% against the published amplicon thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 96.2 measured ×1 100%

adapter content pct 0 measured ×0.5 100%

QC cost 11 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0