PRJNA663046

BioProject first seen 2021

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

99/100 · A

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means

claude:haiku

This mouse RNA-Seq from MiSeq totals 38.7 billion bases with good quality (89.4% Q30). The dataset supports gene expression profiling in rodent samples.

Data type / assay

bulk-RNA-seq

Organism

Mus musculus

Instrument

Illumina MiSeq

Platform

ILLUMINA

Read type

short-read

Files available

FASTQ (raw reads)

N numbers (samples, groups)

6 runs

Metrics (value · how obtained)

checksum ok yes reported

total bases 38691668442 reported

total reads 168506447 reported

n content pct 0.014 measured

pct q20 bases 94.4 measured

pct q30 bases 89.4 measured

gc content pct 49.2 measured

mean read length 151 measured

mean base quality 35.3 measured

adapter content pct 0 measured

duplication rate pct 6.55 measured

How this grade was computed

Weighted mean of 4 scored metric(s) → 99/100

The A grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 89.4 measured ×1 97%

mean base quality 35.3 measured ×0.6 100%

adapter content pct 0 measured ×0.4 100%

duplication rate pct 6.55 measured ×0.4 100%

QC cost 16 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0