PRJNA666685

BioProject

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

72/100 · C

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

Data type / assay

WGS

Organism

Severe acute respiratory syndrome coronavirus 2

Instrument

Illumina MiSeq

Platform

ILLUMINA

Read type

short-read

Files available

FASTQ (raw reads)

N numbers (samples, groups)

20 runs

Metrics (value · how obtained)

checksum ok yes reported

total bases 4863126410 reported

total reads 31210957 reported

n content pct 3.112 measured

pct q20 bases 96.4 measured

pct q30 bases 95.6 measured

gc content pct 52.1 measured

mean read length 75 measured

mean base quality 36.1 measured

adapter content pct 2.37 measured

duplication rate pct 82.61 measured

How this grade was computed

Weighted mean of 3 scored metric(s) → 72/100

The C grade is a transparent weighted average. Each metric below scored from 0–100% against the published WGS thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 95.6 measured ×1 100%

duplication rate pct 82.61 measured ×0.5 0%

adapter content pct 2.37 measured ×0.4 90%

QC cost 11 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0