Corpus 1,276 assessed · 1,177 scored · 644 reproduced ≥75 · 170 flagged ·∅ 74/100
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PRJNA670737

BioProject first seen 2024

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

33/100 · F

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

This hybrid-read amplicon dataset from human samples on MiSeq totals 279 billion bases combining short and long reads, though with notably lower base quality (22.4% Q30). The mixed read lengths may assist in resolving complex targets despite quality limitations.

Data type / assay
amplicon
Organism
Homo sapiens
Instrument
Illumina MiSeq
Platform
ILLUMINA
Read type
hybrid (short+long)
Files available
FASTQ (raw reads)
N numbers (samples, groups)
111 runs
Metrics (value · how obtained)
checksum ok yes reported
total bases 279657588740 reported
total reads 956894689 reported
n content pct 0 measured
pct q20 bases 43.7 measured
pct q30 bases 22.4 measured
gc content pct 41.5 measured
mean read length 5371.3 measured
mean base quality 18.7 measured
adapter content pct 0 measured
duplication rate pct 0.47 measured
mean target coverage 4510.6 extrapolated
How this grade was computed
Weighted mean of 2 scored metric(s) → 33/100

The F grade is a transparent weighted average. Each metric below scored from 0–100% against the published amplicon thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 22.4 measured ×1 0%
adapter content pct 0 measured ×0.5 100%
QC cost 29 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0