PRJNA673243

BioProject first seen 2021

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

100/100 · A

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means

claude:haiku

Large mouse amplicon survey from an Illumina MiSeq generating 938 million reads (274 Gb) at 94% Q30. The massive read depth enables ultra-sensitive community profiling and rare variant detection in complex microbiota.

Data type / assay

amplicon

Organism

Mus musculus

Instrument

Illumina MiSeq

Platform

ILLUMINA

Read type

short-read

Files available

FASTQ (raw reads)

N numbers (samples, groups)

55 runs

Metrics (value · how obtained)

checksum ok yes reported

total bases 274495252384 reported

total reads 938358826 reported

n content pct 0.009 measured

pct q20 bases 97.7 measured

pct q30 bases 93.7 measured

gc content pct 55.3 measured

mean read length 145.1 measured

mean base quality 35.9 measured

adapter content pct 0.01 measured

duplication rate pct 45.43 measured

mean target coverage 5083.2 extrapolated

How this grade was computed

Weighted mean of 2 scored metric(s) → 100/100

The A grade is a transparent weighted average. Each metric below scored from 0–100% against the published amplicon thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 93.7 measured ×1 100%

adapter content pct 0.01 measured ×0.5 100%

QC cost 13 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0