Corpus 1,276 assessed · 1,177 scored · 644 reproduced ≥75 · 170 flagged ·∅ 74/100
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PRJNA676148

BioProject first seen 2021

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

86/100 · B

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

MiSeq short-read amplicon of human gut microbiome yielding 6.7M reads with 93.9% Q20 bases, sufficient for taxonomic profiling and community composition analysis. Moderate read quality and moderate GC (57.8%) typical of gut bacterial populations enables alpha-diversity assessment.

Data type / assay
amplicon
Organism
human gut metagenome
Instrument
Illumina MiSeq
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads)
N numbers (samples, groups)
67 runs
Metrics (value · how obtained)
checksum ok yes reported
total bases 4015406220 reported
total reads 6670110 reported
n content pct 0.001 measured
pct q20 bases 93.9 measured
pct q30 bases 85.8 measured
gc content pct 57.8 measured
mean read length 301 measured
mean base quality 34.7 measured
adapter content pct 0.01 measured
duplication rate pct 97.63 measured
How this grade was computed
Weighted mean of 2 scored metric(s) → 86/100

The B grade is a transparent weighted average. Each metric below scored from 0–100% against the published amplicon thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 85.8 measured ×1 79%
adapter content pct 0.01 measured ×0.5 100%
QC cost 2 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0