Corpus 1,278 assessed · 1,179 scored · 644 reproduced ≥75 · 170 flagged ·∅ 74/100
← Dataset search

PRJNA67621

BioProject first seen 2023

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

100/100 · A

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

Large amplicon survey of Physalis peruviana (cape gooseberry) with 100 million short reads at 93% Q30. The high read depth supports rare variant detection and copy-number variation analysis if targeting specific genomic regions, though the modest total bases may limit genome-wide coverage.

Data type / assay
amplicon
Organism
Physalis peruviana
Instrument
454 GS FLX Titanium
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads)
N numbers (samples, groups)
12 runs
Metrics (value · how obtained)
checksum ok yes reported
total bases 11021843887 reported
total reads 100765637 reported
n content pct 0.015 measured
pct q20 bases 96.5 measured
pct q30 bases 92.9 measured
gc content pct 44.1 measured
mean read length 100 measured
mean base quality 36 measured
adapter content pct 0.21 measured
duplication rate pct 28.32 measured
How this grade was computed
Weighted mean of 2 scored metric(s) → 100/100

The A grade is a transparent weighted average. Each metric below scored from 0–100% against the published amplicon thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 92.9 measured ×1 100%
adapter content pct 0.21 measured ×0.5 100%
QC cost 37 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0