PRJNA679275

BioProject first seen 2021

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

33/100 · F

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means

claude:haiku

This human gut amplicon dataset from MiSeq totals 1.88 billion bases with moderate quality (68.4% Q30). The dataset provides gut microbiota profiling data despite non-ideal metrics.

Data type / assay

amplicon

Organism

human gut metagenome

Instrument

Illumina MiSeq

Platform

ILLUMINA

Read type

short-read

Files available

FASTQ (raw reads)

N numbers (samples, groups)

20 runs

Metrics (value · how obtained)

checksum ok yes reported

total bases 1883853278 reported

total reads 3147325 reported

n content pct 0.012 measured

pct q20 bases 83.2 measured

pct q30 bases 68.4 measured

gc content pct 53.2 measured

mean read length 299.6 measured

mean base quality 30.7 measured

adapter content pct 0 measured

duplication rate pct 89.82 measured

How this grade was computed

Weighted mean of 2 scored metric(s) → 33/100

The F grade is a transparent weighted average. Each metric below scored from 0–100% against the published amplicon thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 68.4 measured ×1 0%

adapter content pct 0 measured ×0.5 100%

QC cost 15 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0