PRJNA681323

BioProject first seen 2021

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

84/100 · B

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means

claude:haiku

NextSeq 550 whole-exome capture sequencing of human samples using targeted enrichment with moderate Q20 (90.2%), designed specifically for exonic variant calling and clinical genetic diagnosis applications.

Data type / assay

WES

Organism

Homo sapiens

Instrument

NextSeq 550

Platform

ILLUMINA

Read type

short-read

Files available

FASTQ (raw reads)

N numbers (samples, groups)

21 runs

Metrics (value · how obtained)

checksum ok yes reported

total bases 16677608138 reported

total reads 27780752 reported

n content pct 0.001 measured

pct q20 bases 90.2 measured

pct q30 bases 79.9 measured

gc content pct 44 measured

mean read length 300.1 measured

mean base quality 33.2 measured

adapter content pct 0.06 measured

duplication rate pct 1.48 measured

mean target coverage 269 extrapolated

How this grade was computed

Weighted mean of 4 scored metric(s) → 84/100

The B grade is a transparent weighted average. Each metric below scored from 0–100% against the published WES thresholds, weighted by its importance; nothing is hidden or subjective.

mean target coverage 269 extrapolated ×1.2 100%

pct q30 bases 79.9 measured ×1 50%

duplication rate pct 1.48 measured ×0.5 100%

adapter content pct 0.06 measured ×0.4 100%

QC cost 53 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0