Corpus 1,272 assessed · 1,173 scored · 643 reproduced ≥75 · 168 flagged ·∅ 74.1/100
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PRJNA681437

BioProject first seen 2021

Provenance — who produced it, who reused it

Linked to 2 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

2 further papers cite this accession but reuse could not be confirmed.

Deep data QC

100/100 · A

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

WGS (Sus scrofa, BGISEQ-500). A grade measured metrics, but evidence_strength is low (0.61). Mean coverage (2373×) is extrapolated rather than measured, and this extreme depth is unrealistic; deep measured validation of coverage-based claims is pending before major genomic studies.

Data type / assay
WGS
Organism
Sus scrofa
Instrument
BGISEQ-500
Platform
BGISEQ
Read type
short-read
Files available
FASTQ (raw reads)
N numbers (samples, groups)
58 runs
Metrics (value · how obtained)
checksum ok yes reported
total bases 5932605584850.001 reported
total reads 28250502785 reported
mean coverage 2373 extrapolated
n content pct 0 measured
pct q20 bases 100 measured
pct q30 bases 100 measured
gc content pct 46.1 measured
mean read length 100 measured
mean base quality 30 measured
adapter content pct 0.97 measured
duplication rate pct 2.01 measured
How this grade was computed
Weighted mean of 4 scored metric(s) → 100/100

The A grade is a transparent weighted average. Each metric below scored from 0–100% against the published WGS thresholds, weighted by its importance; nothing is hidden or subjective.

mean coverage 2373 extrapolated ×1.2 100%
pct q30 bases 100 measured ×1 100%
duplication rate pct 2.01 measured ×0.5 100%
adapter content pct 0.97 measured ×0.4 100%
QC cost 17 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0