PRJNA683064

BioProject first seen 2021

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

86/100 · B

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means

claude:haiku

This mouse gut amplicon dataset from MiSeq totals 5.8 billion bases with high quality (85.8% Q30). The dataset supports profiling of rodent intestinal microbiota.

Data type / assay

amplicon

Organism

mouse gut metagenome

Instrument

Illumina MiSeq

Platform

ILLUMINA

Read type

short-read

Files available

FASTQ (raw reads)

N numbers (samples, groups)

234 runs

Metrics (value · how obtained)

checksum ok yes reported

total bases 5761555500 reported

total reads 11523111 reported

n content pct 0 measured

pct q20 bases 89.2 measured

pct q30 bases 85.8 measured

gc content pct 53.3 measured

mean read length 250 measured

mean base quality 33.6 measured

adapter content pct 0.1 measured

duplication rate pct 94.48 measured

How this grade was computed

Weighted mean of 2 scored metric(s) → 86/100

The B grade is a transparent weighted average. Each metric below scored from 0–100% against the published amplicon thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 85.8 measured ×1 79%

adapter content pct 0.1 measured ×0.5 100%

QC cost 5 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0