Corpus 1,278 assessed · 1,179 scored · 644 reproduced ≥75 · 170 flagged ·∅ 74/100
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PRJNA685916

BioProject first seen 2021

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

95/100 · A

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

Illumina HiSeq 2500 amplicon of marine diatom (Bacteriastrum furcatum) with 8.5M reads and good quality (95.2% Q20, 88.4% Q30), suitable for gene expression or population genetics in cultured microalga. Moderate depth appropriate for strain-level studies.

Data type / assay
amplicon
Organism
Bacteriastrum furcatum
Instrument
Illumina HiSeq 2500
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads)
N numbers (samples, groups)
106 runs
Metrics (value · how obtained)
checksum ok yes reported
total bases 4237949114 reported
total reads 8476268 reported
n content pct 0.003 measured
pct q20 bases 95.2 measured
pct q30 bases 88.4 measured
gc content pct 54.1 measured
mean read length 250 measured
mean base quality 34.9 measured
adapter content pct 0 measured
duplication rate pct 96.97 measured
How this grade was computed
Weighted mean of 2 scored metric(s) → 95/100

The A grade is a transparent weighted average. Each metric below scored from 0–100% against the published amplicon thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 88.4 measured ×1 92%
adapter content pct 0 measured ×0.5 100%
QC cost 2 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0