PRJNA686136

BioProject first seen 2021

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

87/100 · B

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means

claude:haiku

Massive human WGS from a BGISEQ-500 platform yielding 10.9 billion short reads (2.8 trillion bases) at 91% Q30, with 908-fold coverage. This exceptional depth enables comprehensive detection of structural variants, copy-number variation, and ultra-rare mutations in clinical or population genomics.

Data type / assay

WGS

Organism

Homo sapiens

Instrument

BGISEQ-500

Platform

BGISEQ

Read type

short-read

Files available

FASTQ (raw reads)

N numbers (samples, groups)

789 runs

Metrics (value · how obtained)

checksum ok yes reported

total bases 2815783456078 reported

total reads 10973462283 reported

mean coverage 908.3 extrapolated

n content pct 0.007 measured

pct q20 bases 95.6 measured

pct q30 bases 90.9 measured

gc content pct 42.1 measured

mean read length 151 measured

mean base quality 37.9 measured

adapter content pct 31.37 measured

duplication rate pct 4.54 measured

How this grade was computed

Weighted mean of 4 scored metric(s) → 87/100

The B grade is a transparent weighted average. Each metric below scored from 0–100% against the published WGS thresholds, weighted by its importance; nothing is hidden or subjective.

mean coverage 908.3 extrapolated ×1.2 100%

pct q30 bases 90.9 measured ×1 100%

duplication rate pct 4.54 measured ×0.5 100%

adapter content pct 31.37 measured ×0.4 0%

QC cost 18 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0