PRJNA687877

BioProject first seen 2021

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

84/100 · B

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means

claude:haiku

BGISEQ-500 mouse transcriptome sequencing with high-quality bases (98.7% Q20) and large data volume (~413 million reads) enabling comprehensive gene expression profiling and tissue-level RNA dynamics in model mammals.

Data type / assay

bulk-RNA-seq

Organism

Mus musculus

Instrument

BGISEQ-500

Platform

BGISEQ

Read type

short-read

Files available

FASTQ (raw reads)

N numbers (samples, groups)

20 runs

Metrics (value · how obtained)

checksum ok yes reported

total bases 58870128190 reported

total reads 412931501 reported

n content pct 0 measured

pct q20 bases 98.7 measured

pct q30 bases 96.1 measured

gc content pct 55.3 measured

mean read length 28.8 measured

mean base quality 36.2 measured

adapter content pct 0 measured

duplication rate pct 74.43 measured

How this grade was computed

Weighted mean of 4 scored metric(s) → 84/100

The B grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 96.1 measured ×1 100%

mean base quality 36.2 measured ×0.6 100%

adapter content pct 0 measured ×0.4 100%

duplication rate pct 74.43 measured ×0.4 1%

QC cost 54 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0