PRJNA690099

BioProject first seen 2021

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

81/100 · B

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means

claude:haiku

NovaSeq 6000 whole-genome sequencing of the white wagtail (Motacilla alba) with deep coverage (~3.7 billion reads) and good quality (97.3% Q20) supporting avian population genetics, phylogeography, and comparative genomic studies.

Data type / assay

WGS

Organism

Motacilla alba

Instrument

Illumina NovaSeq 6000

Platform

ILLUMINA

Read type

short-read

Files available

FASTQ (raw reads)

N numbers (samples, groups)

84 runs

Metrics (value · how obtained)

checksum ok yes reported

total bases 1115568984675 reported

total reads 3700715109 reported

n content pct 0.001 measured

pct q20 bases 97.3 measured

pct q30 bases 92.5 measured

gc content pct 43.9 measured

mean read length 151 measured

mean base quality 35.7 measured

adapter content pct 13.84 measured

duplication rate pct 6.49 measured

How this grade was computed

Weighted mean of 3 scored metric(s) → 81/100

The B grade is a transparent weighted average. Each metric below scored from 0–100% against the published WGS thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 92.5 measured ×1 100%

duplication rate pct 6.49 measured ×0.5 100%

adapter content pct 13.84 measured ×0.4 8%

QC cost 52 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0