PRJNA691721

BioProject

Provenance — who produced it, who reused it

Linked to 0 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

No linked papers found in the corpus yet.

Deep data QC

100/100 · A

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means

claude:haiku

Amplicon sequencing of sulfate-reducing bacteria via Illumina HiSeq 2500 with high quality (96.5% Q20), enabling accurate taxonomic and functional profiling of *Desulfovibrio* populations. Useful for studying anaerobic processes and microbial ecology in environments like sediments or biofilms.

Data type / assay

amplicon

Organism

Desulfovibrio desulfuricans

Instrument

Illumina HiSeq 2500

Platform

ILLUMINA

Read type

hybrid (short+long)

Files available

FASTQ (raw reads)

N numbers (samples, groups)

15 runs

Metrics (value · how obtained)

checksum ok yes reported

total bases 35019506717 reported

total reads 113064855 reported

n content pct 0 measured

pct q20 bases 96.5 measured

pct q30 bases 90.1 measured

gc content pct 52.2 measured

mean read length 300.6 measured

mean base quality 35.6 measured

adapter content pct 0 measured

duplication rate pct 69.48 measured

How this grade was computed

Weighted mean of 2 scored metric(s) → 100/100

The A grade is a transparent weighted average. Each metric below scored from 0–100% against the published amplicon thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 90.1 measured ×1 100%

adapter content pct 0 measured ×0.5 100%

QC cost 2 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0