Corpus 1,272 assessed · 1,173 scored · 643 reproduced ≥75 · 168 flagged ·∅ 74.1/100
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PRJNA692613

BioProject first seen 2021

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

68/100 · D

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

PacBio Sequel long-read WGS of nematode (Caenorhabditis elegans) with 29.4M reads at exceptional 3000x depth, ideal for complete genome assembly, variant phasing, and structural variation discovery. Long reads resolve repetitive regions and complex genomic structures inaccessible to short-read methods.

Data type / assay
WGS
Organism
Caenorhabditis elegans
Instrument
Sequel
Platform
PACBIO_SMRT
Read type
long-read
Files available
FASTQ (raw reads)
N numbers (samples, groups)
14 runs
Metrics (value · how obtained)
checksum ok yes reported
total bases 300069401040 reported
total reads 29413080 reported
mean coverage 3000.7 extrapolated
n content pct 0 measured
pct q20 bases 0 measured
pct q30 bases 0 measured
gc content pct 35.6 measured
mean read length 9958.3 measured
mean base quality 0 measured
adapter content pct 0.01 measured
duplication rate pct 0.12 measured
How this grade was computed
Weighted mean of 4 scored metric(s) → 68/100

The D grade is a transparent weighted average. Each metric below scored from 0–100% against the published WGS thresholds, weighted by its importance; nothing is hidden or subjective.

mean coverage 3000.7 extrapolated ×1.2 100%
pct q30 bases 0 measured ×1 0%
duplication rate pct 0.12 measured ×0.5 100%
adapter content pct 0.01 measured ×0.4 100%
QC cost 28 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0