Corpus 1,280 assessed · 1,181 scored · 646 reproduced ≥75 · 170 flagged ·∅ 74/100
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PRJNA700444

BioProject first seen 2021

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

83/100 · B

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

Mouse RNA-seq from an Illumina MiSeq with 1.1 million short reads at 93% Q30, representing a very shallow library. The minimal depth limits this dataset to presence/absence studies or highly-abundant transcript detection.

Data type / assay
bulk-RNA-seq
Organism
Mus musculus
Instrument
Illumina MiSeq
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads)
N numbers (samples, groups)
24 runs
Metrics (value · how obtained)
checksum ok yes reported
total bases 652368136 reported
total reads 1083668 reported
n content pct 0 measured
pct q20 bases 97.6 measured
pct q30 bases 93 measured
gc content pct 56.3 measured
mean read length 301 measured
mean base quality 36.2 measured
adapter content pct 0 measured
duplication rate pct 98.34 measured
How this grade was computed
Weighted mean of 4 scored metric(s) → 83/100

The B grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 93 measured ×1 100%
mean base quality 36.2 measured ×0.6 100%
adapter content pct 0 measured ×0.4 100%
duplication rate pct 98.34 measured ×0.4 0%
QC cost 8 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0