PRJNA701480

BioProject first seen 2021

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

82/100 · B

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means

claude:haiku

Human gut metagenome WGS via NovaSeq 6000 from 116 samples totaling 514 billion bases (92.9% Q20), providing high-volume microbial genomics with excellent platform throughput; per-sample coverage supports both abundance and presence/absence profiling of community members.

Data type / assay

WGS

Organism

human gut metagenome

Instrument

Illumina NovaSeq 6000

Platform

ILLUMINA

Read type

short-read

Files available

FASTQ (raw reads)

N numbers (samples, groups)

116 runs

Metrics (value · how obtained)

checksum ok yes reported

total bases 514169567392 reported

total reads 1947328947 reported

n content pct 0 measured

pct q20 bases 92.9 measured

pct q30 bases 83.6 measured

gc content pct 45.9 measured

mean read length 126.5 measured

mean base quality 34 measured

adapter content pct 0 measured

duplication rate pct 8.81 measured

How this grade was computed

Weighted mean of 3 scored metric(s) → 82/100

The B grade is a transparent weighted average. Each metric below scored from 0–100% against the published WGS thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 83.6 measured ×1 68%

duplication rate pct 8.81 measured ×0.5 98%

adapter content pct 0 measured ×0.4 100%

QC cost 26 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0