PRJNA701935

BioProject first seen 2022

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

92/100 · A

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means

claude:haiku

Bioreactor metagenome amplicon sequencing via MiSeq from 21 samples reaching 2.4 billion bases (92.1% Q20), supporting microbial community analysis in engineered fermentation systems; per-sample read yield varies but total depth enables quantitative abundance profiling.

Data type / assay

amplicon

Organism

bioreactor metagenome

Instrument

Illumina MiSeq

Platform

ILLUMINA

Read type

short-read

Files available

FASTQ (raw reads)

N numbers (samples, groups)

21 runs

Metrics (value · how obtained)

checksum ok yes reported

total bases 2417057000 reported

total reads 4834114 reported

n content pct 0 measured

pct q20 bases 92.1 measured

pct q30 bases 87.5 measured

gc content pct 53.3 measured

mean read length 250 measured

mean base quality 34.6 measured

adapter content pct 0.14 measured

duplication rate pct 91.92 measured

How this grade was computed

Weighted mean of 2 scored metric(s) → 92/100

The A grade is a transparent weighted average. Each metric below scored from 0–100% against the published amplicon thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 87.5 measured ×1 88%

adapter content pct 0.14 measured ×0.5 100%

QC cost 23 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0