Corpus 1,273 assessed · 1,174 scored · 643 reproduced ≥75 · 169 flagged ·∅ 74.1/100
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PRJNA714258

BioProject first seen 2021

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

72/100 · C

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

Arabidopsis thaliana amplicon sequencing via NextSeq 550 with massive scale (1.36B reads, 122B bases) and good quality (86.1% ≥Q20, 81.5% ≥Q30). Large-scale plant amplicon dataset despite NextSeq's lower per-base accuracy; supports population genetics and marker-based plant studies.

Data type / assay
amplicon
Organism
Arabidopsis thaliana
Instrument
NextSeq 550
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads)
N numbers (samples, groups)
97 runs
Metrics (value · how obtained)
checksum ok yes reported
total bases 122289324037 reported
total reads 1360405790 reported
n content pct 0.001 measured
pct q20 bases 86.1 measured
pct q30 bases 81.5 measured
gc content pct 56.7 measured
mean read length 75 measured
mean base quality 31.8 measured
adapter content pct 0 measured
duplication rate pct 89.18 measured
mean target coverage 45292.3 extrapolated
How this grade was computed
Weighted mean of 2 scored metric(s) → 72/100

The C grade is a transparent weighted average. Each metric below scored from 0–100% against the published amplicon thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 81.5 measured ×1 57%
adapter content pct 0 measured ×0.5 100%
QC cost 17 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0