PRJNA71531

BioProject first seen 2016

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

88/100 · B

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means

claude:haiku

Bacteroides stercoris WGS from an Illumina HiSeq 2000 with 17 million short reads at 86% Q30. While modest coverage, this dataset is sufficient for single-strain genome assembly and understanding the genomic basis of this prevalent human commensal.

Data type / assay

WGS

Organism

Bacteroides stercoris CC31F

Instrument

Illumina HiSeq 2000

Platform

ILLUMINA

Read type

short-read

Files available

FASTQ (raw reads)

N numbers (samples, groups)

2 runs

Metrics (value · how obtained)

checksum ok yes reported

total bases 3494766246 reported

total reads 17300823 reported

n content pct 0.026 measured

pct q20 bases 92.8 measured

pct q30 bases 86 measured

gc content pct 45.9 measured

mean read length 101 measured

mean base quality 33.8 measured

adapter content pct 1.67 measured

duplication rate pct 7.73 measured

How this grade was computed

Weighted mean of 3 scored metric(s) → 88/100

The B grade is a transparent weighted average. Each metric below scored from 0–100% against the published WGS thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 86 measured ×1 80%

duplication rate pct 7.73 measured ×0.5 100%

adapter content pct 1.67 measured ×0.4 95%

QC cost 12 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0