PRJNA715658

BioProject first seen 2021

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

86/100 · B

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means

claude:haiku

NextSeq 500 metagenomic WGS of gut microbiota with ~457 million reads (92.2% Q20) totaling ~128 billion bases enables functional profiling, metabolic pathway reconstruction, and community-wide genomic annotation in complex host-associated ecosystems.

Data type / assay

WGS

Organism

gut metagenome

Instrument

NextSeq 500

Platform

ILLUMINA

Read type

short-read

Files available

FASTQ (raw reads)

N numbers (samples, groups)

751 runs

Metrics (value · how obtained)

checksum ok yes reported

total bases 128400390252 reported

total reads 456872471 reported

n content pct 0.002 measured

pct q20 bases 92.2 measured

pct q30 bases 88.1 measured

gc content pct 48 measured

mean read length 114.8 measured

mean base quality 33.3 measured

adapter content pct 0 measured

duplication rate pct 18.56 measured

How this grade was computed

Weighted mean of 3 scored metric(s) → 86/100

The B grade is a transparent weighted average. Each metric below scored from 0–100% against the published WGS thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 88.1 measured ×1 91%

duplication rate pct 18.56 measured ×0.5 67%

adapter content pct 0 measured ×0.4 100%

QC cost 5 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0