PRJNA71569

BioProject first seen 2017

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

76/100 · C

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means

claude:haiku

Enterocloster bolteae CC43_001B whole-genome sequencing on HiSeq 2000 yielding 3.4 billion bases (91.1% Q20), providing draft genome data for this gut bacterium with respectable coverage for microbial assembly.

Data type / assay

WGS

Organism

Enterocloster bolteae CC43_001B

Instrument

Illumina HiSeq 2000

Platform

ILLUMINA

Read type

short-read

Files available

FASTQ (raw reads)

N numbers (samples, groups)

2 runs

Metrics (value · how obtained)

checksum ok yes reported

total bases 3423962620 reported

total reads 16950310 reported

n content pct 0.017 measured

pct q20 bases 91.1 measured

pct q30 bases 83.5 measured

gc content pct 50.5 measured

mean read length 101 measured

mean base quality 33.1 measured

adapter content pct 0.13 measured

duplication rate pct 15.89 measured

How this grade was computed

Weighted mean of 3 scored metric(s) → 76/100

The C grade is a transparent weighted average. Each metric below scored from 0–100% against the published WGS thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 83.5 measured ×1 68%

duplication rate pct 15.89 measured ×0.5 75%

adapter content pct 0.13 measured ×0.4 100%

QC cost 45 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0