PRJNA717804

BioProject first seen 2022

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

74/100 · C

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means

claude:haiku

Chlamydomonas reinhardtii bulk RNA-Seq from HiSeq 2000 with 361M reads at good quality (95.9% ≥Q20, 81.8% ≥Q30). Large-scale algal transcriptomics dataset supporting gene expression studies and photosynthetic organism genomics.

Data type / assay

bulk-RNA-seq

Organism

Chlamydomonas reinhardtii

Instrument

Illumina HiSeq 2000

Platform

ILLUMINA

Read type

short-read

Files available

FASTQ (raw reads)

N numbers (samples, groups)

6 runs

Metrics (value · how obtained)

checksum ok yes reported

total bases 18443495160 reported

total reads 361637160 reported

n content pct 0.012 measured

pct q20 bases 95.9 measured

pct q30 bases 81.8 measured

gc content pct 53.7 measured

mean read length 51 measured

mean base quality 35.6 measured

adapter content pct 0.14 measured

duplication rate pct 53.28 measured

How this grade was computed

Weighted mean of 4 scored metric(s) → 74/100

The C grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 81.8 measured ×1 59%

mean base quality 35.6 measured ×0.6 100%

adapter content pct 0.14 measured ×0.4 100%

duplication rate pct 53.28 measured ×0.4 48%

QC cost 1 min compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0