Corpus 1,272 assessed · 1,173 scored · 643 reproduced ≥75 · 168 flagged ·∅ 74.1/100
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PRJNA725525

BioProject first seen 2022

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

68/100 · D

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

Homo sapiens long-read WGS via PromethION (Oxford Nanopore) generates 66M reads totaling 751B bases at 242× coverage with moderate base accuracy (57.5% ≥Q20), enabling structural-variant and complex-repetitive-region resolution impossible with short reads. Long-read advantage ideal for difficult genomic loci; moderate per-base accuracy requires orthogonal validation for clinical-grade applications.

Data type / assay
WGS
Organism
Homo sapiens
Instrument
PromethION
Platform
OXFORD_NANOPORE
Read type
long-read
Files available
FASTQ (raw reads)
N numbers (samples, groups)
10 runs
Metrics (value · how obtained)
checksum ok yes reported
total bases 751282142076 reported
total reads 66055734 reported
mean coverage 242.3 extrapolated
n content pct 0 measured
pct q20 bases 57.5 measured
pct q30 bases 22 measured
gc content pct 39.6 measured
mean read length 10264.1 measured
mean base quality 20.9 measured
adapter content pct 0 measured
duplication rate pct 0 measured
How this grade was computed
Weighted mean of 4 scored metric(s) → 68/100

The D grade is a transparent weighted average. Each metric below scored from 0–100% against the published WGS thresholds, weighted by its importance; nothing is hidden or subjective.

mean coverage 242.3 extrapolated ×1.2 100%
pct q30 bases 22 measured ×1 0%
duplication rate pct 0 measured ×0.5 100%
adapter content pct 0 measured ×0.4 100%
QC cost 21 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0