Corpus 1,278 assessed · 1,179 scored · 644 reproduced ≥75 · 170 flagged ·∅ 74/100
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PRJNA725631

BioProject first seen 2021

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

100/100 · A

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

Gut metagenome amplicon survey using Illumina MiSeq delivers 49.7M high-quality short reads (99.2% ≥Q20, 96.8% ≥Q30), ideal for high-resolution 16S/18S rRNA community analysis and microbiota comparisons. Excellent base accuracy supports robust OTU/ASV clustering; common search terms: human microbiome amplicon, gut bacterial community profiling.

Data type / assay
amplicon
Organism
gut metagenome
Instrument
Illumina MiSeq
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads)
N numbers (samples, groups)
352 runs
Metrics (value · how obtained)
checksum ok yes reported
total bases 29964413948 reported
total reads 49774774 reported
n content pct 0 measured
pct q20 bases 99.2 measured
pct q30 bases 96.8 measured
gc content pct 53.4 measured
mean read length 301 measured
mean base quality 37.1 measured
adapter content pct 0 measured
duplication rate pct 98.67 measured
How this grade was computed
Weighted mean of 2 scored metric(s) → 100/100

The A grade is a transparent weighted average. Each metric below scored from 0–100% against the published amplicon thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 96.8 measured ×1 100%
adapter content pct 0 measured ×0.5 100%
QC cost 10 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0